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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150197111_150200057_R

Intron Information:

Intron Rank:
155573
Intron Class:
major
Intron Phase:
Intron Coordinates:
150197111 - 150200057
Intron Length:
2947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TTTTCATTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
65.8
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.9
75.1
38.7
Minor 5ss
26.8
-2.7
3.4
33.4
35.8
Minor BPS
69.3
0.6
1.9
84.69
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035440
150183815 - 150212335
28521
ENSAPLT00000039934
150196542 - 150212335
15794