About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150238397_150248357_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150238397 - 150248357
Intron Length:
9961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTTTTCTTACAG
Flanking Amino Acid:
VLIPVKQFPKFNFVGKLLGP
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
KHDRBS3
Ensembl Gene ID:
ENSAPLG00000014746
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035108
150212356 - 150303283
90928
ENSAPLT00000033324
150212356 - 150303283
90928
ENSAPLT00000015391
150212356 - 150299689
87334
ENSAPLT00000038920
150212356 - 150300112
87757