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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150251998_150258125_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150251998 - 150258125
Intron Length:
6128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
CCCTCTGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
TTTTCTCTACCT
Flanking Amino Acid:
LEEIKKFLIPDYNDEIRQAQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
76.3
38.8
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
73.1
0.52
0.8
67.3
32.6
Minor 5ss
40.9
-1
2.9
63.4
40.5
Minor BPS
64.3
0.53
1.9
88.42
36.8

Associated Gene:

Gene:
KHDRBS3
Ensembl Gene ID:
ENSAPLG00000014746
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033324
150212356 - 150303283
90928
ENSAPLT00000015391
150212356 - 150299689
87334
ENSAPLT00000038920
150212356 - 150300112
87757
ENSAPLT00000035108
150212356 - 150303283
90928