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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150270024_150280896_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150270024 - 150280896
Intron Length:
10873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCC
Flanking Amino Acid:
PPAQETYGEYEYDDGYGTAY
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.7
85.5
29
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
66.3
0.49
1.5
74.77
35.9

Associated Gene:

Gene:
KHDRBS3
Ensembl Gene ID:
ENSAPLG00000014746
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015391
150212356 - 150299689
87334
ENSAPLT00000038920
150212356 - 150300112
87757
ENSAPLT00000035108
150212356 - 150303283
90928
ENSAPLT00000033324
150212356 - 150303283
90928