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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150280980_150299085_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150280980 - 150299085
Intron Length:
18106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATTT
Flanking Amino Acid:
YDNSYSTQAQRARRMDQLKT
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.7
76.5
25.6
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
56.7
0.29
1.6
73.05
38.4

Associated Gene:

Gene:
KHDRBS3
Ensembl Gene ID:
ENSAPLG00000014746
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033324
150212356 - 150303283
90928
ENSAPLT00000038920
150212356 - 150300112
87757
ENSAPLT00000035108
150212356 - 150303283
90928