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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150299236_150300011_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150299236 - 150300011
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTTTTCACT
Flanking Amino Acid:
PISTSPVYCSNATLEFL*
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
83.5
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76.9
0.6
0.9
71.9
38.7
Minor 5ss
47.9
-0.2
2.8
67.6
37.2
Minor BPS
60.1
0.4
1.8
75.92
41.3

Associated Gene:

Gene:
KHDRBS3
Ensembl Gene ID:
ENSAPLG00000014746
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038920
150212356 - 150300112
87757