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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150313283_150333498_F

Intron Information:

Intron Rank:
128294
Intron Class:
major
Intron Phase:
Intron Coordinates:
150313283 - 150333498
Intron Length:
20216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
CTGTTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.4
69.3
43.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.5
0.6
0.8
72.5
32.4
Minor 5ss
44.8
-0.6
2.9
62.3
42.4
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041550
150311971 - 150333887
21917