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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150455619_150455695_F

Intron Information:

Intron Rank:
137099
Intron Class:
major
Intron Phase:
Intron Coordinates:
150455619 - 150455695
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGAGT
5'SS Class:
major
3'SS Sequence:
TTGACTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAACCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
73.4
43.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.3
0.75
0.9
80.9
36.6
Minor 5ss
29.4
-2.4
3.1
40.7
45.2
Minor BPS
64.6
0.54
1.2
72.72
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042695
150455475 - 150461135
5661