About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15049145_15050720_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15049145 - 15050720
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTCCTGTCATC
Flanking Amino Acid:
LYTNDYTNEKWLKHADEQGR
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
47.1
-0.2
2.3
67.01
39.4

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000033992
15015827 - 15086570
70744