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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150588289_150604039_F

Intron Information:

Intron Rank:
137357
Intron Class:
major
Intron Phase:
Intron Coordinates:
150588289 - 150604039
Intron Length:
15751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAAATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
73.5
36.9
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
53.8
0.2
1.6
69.66
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023972
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048015
150587998 - 150607948
19951
ENSAPLT00000038116
150587998 - 150607948
19951