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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150604233_150605965_F

Intron Information:

Intron Rank:
137358
Intron Class:
major
Intron Phase:
Intron Coordinates:
150604233 - 150605965
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTGTGATAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
87.4
0.84
0.6
85.2
22.1
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
47.8
-0
2.3
72.52
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023972
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038116
150587998 - 150607948
19951