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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15065597_15067222_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15065597 - 15067222
Intron Length:
1626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CAAATATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTTACAAAT
Flanking Amino Acid:
TKITENGKKVRKNWMSSWAV
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
69.9
0.45
1
61.6
43.1
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
47.7
-0
1.9
69.92
41

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744