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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150665505_150665608_F

Intron Information:

Intron Rank:
140096
Intron Class:
major
Intron Phase:
Intron Coordinates:
150665505 - 150665608
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
GCTCTCCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAT
U12 Branch Point Sequence:
ATACCCTGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
79
35.3
Major BPS
62.6
0.31
1
58.7
38.1
Major PPT
71.8
0.49
0.8
62.6
34.6
Minor 5ss
39.4
-1.2
3.1
52.3
37.7
Minor BPS
56.4
0.28
1.7
74.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025334
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022857
150665260 - 150668366
3107