About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15067305_15074253_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15067305 - 15074253
Intron Length:
6949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATC
Flanking Amino Acid:
TKTQGSGTGWKFGVNQSKPE
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.7
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
90.5
0.91
0.6
83.8
31.2
Minor 5ss
47
-0.3
2.8
56.3
47.9
Minor BPS
50.5
-0
1.7
62.33
38.1

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000035657
15015827 - 15086570
70744