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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15074359_15074721_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15074359 - 15074721
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
DKSSKKNVIELRTRQGTELL
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744