About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15074821_15077151_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15074821 - 15077151
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAAATCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCATCTTAAATC
Flanking Amino Acid:
KVLNYTINNQVESDEALEDE
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
64.5
0.33
1
59.5
41.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
60.1
0.3
1.6
66.35
40.2

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744