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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15078296_15081192_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15078296 - 15081192
Intron Length:
2897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGAA
5'SS Class:
major
3'SS Sequence:
TACTTGGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
GTCTCTTTACTT
Flanking Amino Acid:
QAVREKGYIKDQVFGSNLTS
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.9
35
Major BPS
74
0.6
1
65.6
41.1
Major PPT
74.5
0.55
1
65.1
45.3
Minor 5ss
30.9
-2.2
3.2
31.1
43
Minor BPS
63.1
0.49
1.6
75.88
41.7

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744