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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150831699_150848254_F

Intron Information:

Intron Rank:
129141
Intron Class:
major
Intron Phase:
Intron Coordinates:
150831699 - 150848254
Intron Length:
16556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTACTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72
0.5
0.9
65
36.2
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
47.3
-0.1
2.1
65.28
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028793
150831287 - 150849321
18035
ENSAPLT00000027946
150831287 - 150849418
18132