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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15084590_15084854_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15084590 - 15084854
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAACAGAAAT
Flanking Amino Acid:
NHFNDFVNAIKQEPRQRVHA
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.2
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
0.7
77.1
24.9
Minor 5ss
39.7
-1.2
3
52
39.8
Minor BPS
44.8
-0.3
2
66.91
42.2

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744