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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15084958_15085395_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15084958 - 15085395
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
GTGTGTGTATTT
Flanking Amino Acid:
TMQVLFRHLKRVVENGEKNR
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
40.9
-0.6
2.4
59.49
44.9

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000035657
15015827 - 15086570
70744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000033992
15015827 - 15086570
70744
ENSAPLT00000042048
15015827 - 15086570
70744
ENSAPLT00000023174
15015827 - 15085570
69744
ENSAPLT00000038659
15015827 - 15085570
69744