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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151328734_151339785_R

Intron Information:

Intron Rank:
142705
Intron Class:
major
Intron Phase:
Intron Coordinates:
151328734 - 151339785
Intron Length:
11052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
89.2
0.88
0.6
83.6
24.7
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
76.7
0.84
1.6
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024049
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038277
151324416 - 151340686
16271