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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151358261_151361828_R

Intron Information:

Intron Rank:
140185
Intron Class:
major
Intron Phase:
Intron Coordinates:
151358261 - 151361828
Intron Length:
3568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATTTCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
72.7
0.51
0.9
66.6
40.2
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
66.3
0.59
2
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022801
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038543
151358036 - 151390469
32434