About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151448334_151450337_R


Intron Information:

Intron Rank:
18

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
151448334 - 151450337

Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAGTTTA

5'SS Class:
strong_major

3'SS Sequence:
AAATCTTTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAA

U12 Branch Point Sequence:
TGACTTTTAAAA

Flanking Amino Acid:
CKNALKDRHTGPVYAEMINN

Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
98.2
1.14
0.6
93.2
14.5

Major BPS
90.4
1
0.7
90.2
19.3

Major PPT
76.6
0.6
0.9
70
40.2

Minor 5ss
43.8
-0.7
2.8
58.1
46.5

Minor BPS
57.6
0.24
1.4
63.56
36

Associated Gene:

Gene:
FAM135B

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

151448128 - 151588854
140727