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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151450452_151452887_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
151450452 - 151452887
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATGAATT
Flanking Amino Acid:
CFLYQLSQKTGLQYFKNVVL
Intron Amino Acid Position:
1315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.5
0.62
0.9
72.5
37.8
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
54.5
0.22
1.9
78.09
37.6

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727