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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151453716_151454015_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151453716 - 151454015
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTCCTAACA
Flanking Amino Acid:
QLYNLSISRISFIGHSLGNV
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.7
0.71
0.8
77.8
29.5
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
68.4
0.57
1.6
81.54
33

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727