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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151456782_151458187_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
151456782 - 151458187
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATCTTATAAATT
Flanking Amino Acid:
HLVVCVHGLDGNSADLRLVK
Intron Amino Acid Position:
1164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
67
38.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.2
0.63
0.9
68.8
41.6
Minor 5ss
32.4
-2
3
37.8
40.6
Minor BPS
50.2
0.09
1.9
70.57
41

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727