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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151458355_151459975_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151458355 - 151459975
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GATTAATTAATC
Flanking Amino Acid:
VDEEANERMLNFYQAKEKFK
Intron Amino Acid Position:
1108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.9
0.65
0.9
70
40.6
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
56.7
0.19
1.8
67.13
37.7

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727