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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151462041_151463069_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
151462041 - 151463069
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAGAT
U12 Branch Point Sequence:
TTGCAGATACCA
Flanking Amino Acid:
EDRYMDLPCKDQNLDVFPDF
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
58.9
0.22
1.2
54.7
43.1
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
38.6
-0.8
2.4
54.67
43.6

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727