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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151463225_151468228_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151463225 - 151468228
Intron Length:
5004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CCTTTGCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
GGATACTCAATT
Flanking Amino Acid:
KLAVLTFQEGLIQSHGQIST
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
71.8
0.49
1
64.9
41.3
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
53
0.17
1.7
68.4
41.8

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727