About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151470498_151474489_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151470498 - 151474489
Intron Length:
3992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TTCTCCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTCTCAGAATG
Flanking Amino Acid:
TLSQLCTELQLLSNPEKIAE
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.5
0.73
0.7
73.9
31.2
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
47
-0.3
1.8
54.25
40.9

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727