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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15150684_15155881_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15150684 - 15155881
Intron Length:
5198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
SLLRHKYEHTGKRPHECGIC
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84.2
0.77
0.8
77.1
36.8
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
ZEB1
Ensembl Gene ID:
ENSAPLG00000007482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039460
15148210 - 15273677
125468
ENSAPLT00000026683
15148210 - 15273677
125468
ENSAPLT00000007782
15150145 - 15272247
122103