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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151553109_151588758_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151553109 - 151588758
Intron Length:
35650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACGTTTTTAATT
Flanking Amino Acid:
KFHNVDLFQRGYYQIRAGLK
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.6
0.62
0.8
69.4
36.9
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
67.4
0.62
1.2
72.92
39.2

Associated Gene:

Gene:
FAM135B
Ensembl Gene ID:
ENSAPLG00000010289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010729
151448128 - 151588854
140727