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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15159425_15160947_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15159425 - 15160947
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATATCT
Flanking Amino Acid:
HLKEHLRIHSGEKPYECPNC
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.7
0.69
0.8
78.9
34.6
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
59.8
0.38
1.8
84.15
36.8

Associated Gene:

Gene:
ZEB1
Ensembl Gene ID:
ENSAPLG00000007482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039460
15148210 - 15273677
125468
ENSAPLT00000026683
15148210 - 15273677
125468
ENSAPLT00000007782
15150145 - 15272247
122103