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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151653197_151655980_R

Intron Information:

Intron Rank:
133816
Intron Class:
major
Intron Phase:
Intron Coordinates:
151653197 - 151655980
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCCTCACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.6
0.64
0.7
76.5
25.5
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
51.4
0.02
1.9
61.86
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019244
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023373
151652744 - 151656691
3948