Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15171852_15177223_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15171852 - 15177223

Intron Length:

5372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TGTAATATTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTGTGAAAT

Flanking Amino Acid:

GSTNSCWEDEAGKEKKEILG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

79.4

29.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

75.1

0.56

70.7

43.9

Minor 5ss

46.6

-0.4

2.4

59.3

45.3

Minor BPS

53.8

0.2

2.2

81.8

39.4

Associated Gene:

Gene:

ZEB1

Ensembl Gene ID:

ENSAPLG00000007482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026683

15148210 - 15273677

125468

ENSAPLT00000007782

15150145 - 15272247

122103