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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_151737407_151742218_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
151737407 - 151742218
Intron Length:
4812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAACCTG
5'SS Class:
major
3'SS Sequence:
TATCTTTATGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTGCATCT
Flanking Amino Acid:
RALPASFGELMSHSKLNAIW
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1
54.8
43.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
59.7
0.22
1.7
69.9
40.2
Minor 5ss
35.5
-1.6
3.3
43.8
45
Minor BPS
48.7
-0
2.4
79.81
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001708
151737290 - 151742701
5412