About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15177425_15272063_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15177425 - 15272063
Intron Length:
94639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAA
5'SS Class:
major
3'SS Sequence:
TCTTTGTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AGTATATTGATC
Flanking Amino Acid:
MATCAVTNYNNVVEA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
35.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.2
0.7
0.8
75.9
32.8
Minor 5ss
30.7
-2.2
3.2
39.2
46.2
Minor BPS
48.6
-0.1
1.6
58.11
34.1

Associated Gene:

Gene:
ZEB1
Ensembl Gene ID:
ENSAPLG00000007482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007782
15150145 - 15272247
122103