About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152098396_152098511_F

Intron Information:

Intron Rank:
138448
Intron Class:
major
Intron Phase:
Intron Coordinates:
152098396 - 152098511
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
AAATAATATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
60.6
0.24
1.1
52
45.2
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
49.3
-0
2
68.33
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024537
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043841
152097575 - 152100712
3138