About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1522207_1525831_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1522207 - 1525831
Intron Length:
3625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
GTTTTTGACGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CCGTTTTTGACG
Flanking Amino Acid:
ETIMDREKEALEQQRQQLLT
Intron Amino Acid Position:
966

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.9
39.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
69.9
0.45
1
66.2
39.9
Minor 5ss
39.6
-1.2
2.9
57.1
41.1
Minor BPS
54.9
0.01
1.4
52.64
43.3

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017626
1510299 - 1709755
199457
ENSAPLT00000038184
1510299 - 1709755
199457
ENSAPLT00000017188
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457
ENSAPLT00000046273
1510299 - 1709755
199457
ENSAPLT00000015679
1510299 - 1709755
199457
ENSAPLT00000030423
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000038362
1510299 - 1709755
199457