Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1525967 - 1530924

Intron Length:

4958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTTT

5'SS Class:

major

3'SS Sequence:

GTTTTATTCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TGTGTTTTATTC

Flanking Amino Acid:

ALASAATKAKHLAAVEERKI

Intron Amino Acid Position:

921

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

81.7

32.3

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

83.4

0.75

0.8

81.4

35.2

Minor 5ss

48.6

-0.1

2.4

67.6

43.4

Minor BPS

50.9

0.01

1.6

61.73

38.7

Associated Gene:

Gene:

SMARCC1

Ensembl Gene ID:

ENSAPLG00000014937

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025065

1510299 - 1709755

199457

ENSAPLT00000038362

1510299 - 1709755

199457

ENSAPLT00000017626

1510299 - 1709755

199457

ENSAPLT00000038184

1510299 - 1709755

199457

ENSAPLT00000017188

1510299 - 1709755

199457

ENSAPLT00000035479

1510299 - 1709755

199457

ENSAPLT00000046273

1510299 - 1709755

199457

ENSAPLT00000015679

1510299 - 1709755

199457

ENSAPLT00000030423

1510299 - 1709755

199457

ENSAPLT00000045670

1510299 - 1709755

199457

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1525967_1530924_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: