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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152630313_152691684_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152630313 - 152691684
Intron Length:
61372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TAATCAGTAATT
Flanking Amino Acid:
SKAGDFSHVKTLEAILNFKY
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
80.7
0.69
0.8
73.7
36.8
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
51.9
0.14
2.2
75.44
41

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010722
152572879 - 152785033
212155
ENSAPLT00000047582
152572879 - 152785033
212155
ENSAPLT00000010730
152572879 - 152785033
212155