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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152691810_152702212_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152691810 - 152702212
Intron Length:
10403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
QENLLQDLNDDGISVSGLPL
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
74
41
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010730
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155
ENSAPLT00000047582
152572879 - 152785033
212155