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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152729548_152737148_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152729548 - 152737148
Intron Length:
7601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTAATATGACT
Flanking Amino Acid:
MPFELRVENMGLLTTGVEFE
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
100
1.12
0.4
100
0
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
48.3
-0
1.8
70.95
39.5

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047582
152572879 - 152785033
212155
ENSAPLT00000010730
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155