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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152737235_152741582_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152737235 - 152741582
Intron Length:
4348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCTGCTTTAATT
Flanking Amino Acid:
NRGEERTKKIDFQWVQGDVC
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.7
0.67
0.7
75.7
26.5
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
66.8
0.61
1.4
74.65
43.4

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047582
152572879 - 152785033
212155
ENSAPLT00000010730
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155