About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152741729_152746539_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152741729 - 152746539
Intron Length:
4811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTACTCAACA
Flanking Amino Acid:
PVPFTKLPIVRSVKLLNLPT
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.8
0.65
0.9
74.4
34.8
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
72
0.69
1.7
85.21
33.8

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010730
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155
ENSAPLT00000047582
152572879 - 152785033
212155