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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152746667_152760135_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152746667 - 152760135
Intron Length:
13469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTCTTTGAAAC
Flanking Amino Acid:
QTMLDFLSDQEKKDVTQSLE
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.8
0.72
0.8
74.3
40.5
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
50.8
0
1.5
61.4
37.7

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047582
152572879 - 152785033
212155
ENSAPLT00000010730
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155