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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152763014_152768286_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152763014 - 152768286
Intron Length:
5273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCCCTTTAAAT
Flanking Amino Acid:
QNAVYINLRQLSEEEKIQRY
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.8
0.65
0.9
74.9
38.5
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
70.9
0.73
1.4
82.63
38.5

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010730
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155
ENSAPLT00000047582
152572879 - 152785033
212155