About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152770728_152774689_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152770728 - 152774689
Intron Length:
3962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCTGCTCATTT
Flanking Amino Acid:
SAEAGNRHRPGALTSNGINA
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
73.8
0.54
0.9
65.6
41
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
48.1
-0
2.2
71.65
45.8

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010722
152572879 - 152785033
212155