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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152772162_152774689_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152772162 - 152774689
Intron Length:
2528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
AAAAAATCAATT
Flanking Amino Acid:
SAEAGNRHRPGAQEVLIDPG
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
82.7
0.74
0.7
81.3
23.8
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
43
-0.4
1.8
56.68
38.7

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047582
152572879 - 152785033
212155
ENSAPLT00000010730
152572879 - 152785033
212155