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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152776212_152780776_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152776212 - 152780776
Intron Length:
4565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGGAAATAACT
Flanking Amino Acid:
TDSSLLLGLKRHYKKRCQGR
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
47
-0.1
2.1
71.3
44.9

Associated Gene:

Gene:
TRAPPC9
Ensembl Gene ID:
ENSAPLG00000010275
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047582
152572879 - 152785033
212155
ENSAPLT00000010722
152572879 - 152785033
212155